Welcome to the Human Microbiome/SitePainter tool on-line!

Here we present the 16S data btained from 18 bodysites, 200 subjects, and the Whole Genome Shotgun (WGS) data from 7 bodysites, 100 subjects that was generated by the NIH HMP project, processed by the collective effort of the HMP Data Analaysis WG, and visualized by Site Painter developed in the Knight Lab @ CU-Boulder by Antonio Gonzalez Peña, the image used was created by Meg Pirrung & AGP. You can select what dataset you would like to explore from the list below, and SitePainter will allow you to color the different body sites based on gradients of colors to represent the available data.

Note: We are only using a female representation because this is a super set of the male representation.

Currently we have the following analysis/visualizations:
 16S  Taxonomy assignment using RDP @ Level 3   Data Processing: AGP
 16S  Taxonomy assignment using RDP @ Level 6   Data Processing: AGP
 16S  Taxonomy assignment using GreenGenes @ Level 3   Data Processing: AGP
 16S  Taxonomy assignment using GreenGenes @ Level 6   Data Processing: AGP
 16S  Principal Coordinates Analysis (PCoA) values   Data Processing: AGP

 WGS  KEGG functional pathways @ Level 3   Data Processing: Jesse Zaneveld & AGP
 WGS  KEGG functional pathways @ Level 4   Data Processing: Jesse Zaneveld & AGP
 WGS  KEGG modules   Data Processing: Curtis Huttenhower (Harvard SPH), Dan Knights & AGP