HMSCP - Shotgun community profiling
Reads generated by Illumina wgs sequencing were mapped on to a database of reference genomes in order to calculate organism abundance.
For each sample, we provide three files:
- - A tab delimited abundance table, indicating depth and breath of mapping to each reference
- - A metrics file, summarizing the number of reads mapped versus the number that aligned to a reference
- - Mapping alignment files in bam format